Index

Symbols

--allow-any-path command line option, [1] --dandi-instance command line option, [1], [2], [3], [4] --dandiset command line option, [1] --dandiset-path command line option --devel-debug command line option, [1], [2], [3], [4] --diff command line option --digest command line option --download command line option --dry-run command line option --existing command line option, [1], [2], [3] --fields command line option, [1] --files-mode command line option --force command line option --format command line option, [1] --grouping command line option --ignore command line option --invalid command line option --jobs command line option, [1], [2], [3] --log-level command line option --media-files-mode command line option --metadata command line option --min-severity command line option --output-dir command line option --path-type command line option --pdb command line option --preserve-tree command line option --recursive command line option

--regex command line option --required-field command line option --schema command line option, [1] --shell command line option --skip-missing command line option --sync command line option, [1] --update-external-file-paths command line option --upload-dandiset-metadata command line option --use-fake-digest command line option --validation command line option --when command line option --work-on command line option --yes command line option -d command line option, [1], [2], [3] -e command line option, [1], [2], [3] -F command line option, [1] -f command line option, [1], [2] -g command line option -i command line option, [1], [2], [3], [4] -J command line option, [1], [2], [3] -l command line option -o command line option -r command line option -s command line option -w command line option -y command line option {INSTANCE_NAME}_API_KEY

A

abbrev_prompt() (in module dandi.utils) add_asset() (dandi.delete.Deleter method) agg_done() (dandi.download.PYOUTHelper method) agg_files() (dandi.download.PYOUTHelper method) agg_size() (dandi.download.PYOUTHelper method) algorithm (dandi.misctypes.Digest attribute) api (dandi.consts.DandiInstance attribute) (dandi.tests.fixtures.SampleDandiset attribute) (dandi.utils.ServerServices attribute) api_key (dandi.tests.fixtures.DandiAPI attribute) api_key_env_var (dandi.dandiapi.DandiAPIClient property) api_path (dandi.dandiapi.BaseRemoteAsset property) (dandi.dandiapi.RemoteAsset property) (dandi.dandiapi.RemoteDandiset property) api_url (dandi.dandiapi.BaseRemoteAsset property) (dandi.dandiapi.RemoteAsset property) (dandi.dandiapi.RemoteDandiset property) (dandi.dandiarchive.ParsedDandiURL property) (dandi.tests.fixtures.DandiAPI property) append() (dandi.download.DownloadDirectory method) as_copy_mode() (dandi.organize.FileOperationMode method) as_dict() (dandi.download.ItemsSummary method) as_readable() (dandi.dandiapi.BaseRemoteBlobAsset method) (dandi.files.DandisetMetadataFile method) (dandi.files.LocalFileAsset method)

asdict() (dandi.misctypes.Digest method) ASK (dandi.consts.SyncMode attribute) asset_count (dandi.dandiapi.Version attribute) asset_id (dandi.dandiarchive.AssetIDURL attribute) (dandi.dandiarchive.BaseAssetIDURL attribute) asset_paths (dandi.validate.ValidationResult attribute) asset_type (dandi.dandiapi.BaseRemoteAsset property) (dandi.dandiapi.BaseRemoteBlobAsset property) (dandi.dandiapi.BaseRemoteZarrAsset property) asset_validation_errors (dandi.dandiapi.VersionInfo attribute) AssetFolderURL (class in dandi.dandiarchive) AssetGlobURL (class in dandi.dandiarchive) AssetIDURL (class in dandi.dandiarchive) AssetItemURL (class in dandi.dandiarchive) AssetMismatchError AssetPath (class in dandi.move) AssetPathPrefixURL (class in dandi.dandiarchive) assets (dandi.move.RemoteMover attribute) AssetType (class in dandi.dandiapi) attr_value() (dandi.tests.skip.Mark method) (dandi.tests.skip.Namespace method) (dandi.tests.skip.SkipIf method) authenticate() (dandi.dandiapi.DandiAPIClient method) AUTO (dandi.move.MoveWorkOn attribute) (dandi.organize.FileOperationMode attribute)

B

base_download_url (dandi.dandiapi.BaseRemoteAsset property) BaseAssetIDURL (class in dandi.dandiarchive) BasePath (class in dandi.misctypes) BaseRemoteAsset (class in dandi.dandiapi) BaseRemoteBlobAsset (class in dandi.dandiapi) BaseRemoteZarrAsset (class in dandi.dandiapi) BIDS (dandi.validate.Standard attribute) bids_dandiset() (in module dandi.tests.fixtures) bids_dandiset_invalid() (in module dandi.tests.fixtures) bids_dataset_description (dandi.files.BIDSAsset property) bids_dataset_description_ref (dandi.files.BIDSAsset attribute) bids_error_examples() (in module dandi.tests.fixtures) bids_examples() (in module dandi.tests.fixtures)

bids_nwb_dandiset() (in module dandi.tests.fixtures) bids_path (dandi.files.BIDSAsset property) bids_root (dandi.files.BIDSAsset property) (dandi.files.BIDSDatasetDescriptionAsset property) bids_validator_deno (dandi.validate.Validator attribute) bids_version (dandi.files.BIDSDatasetDescriptionAsset property) bids_zarr_dandiset() (in module dandi.tests.fixtures) BIDSAsset (class in dandi.files) BIDSDatasetDescriptionAsset (class in dandi.files) bidsschematools (dandi.validate.Validator attribute) BLOB (dandi.dandiapi.AssetType attribute) blob (dandi.dandiapi.BaseRemoteBlobAsset attribute) blocksize (dandi.support.digests.Digester attribute) BOTH (dandi.move.MoveWorkOn attribute)

C

calculate_moves() (dandi.move.LocalizedMover method) (dandi.move.LocalRemoteMover method) (dandi.move.Mover method) calculate_moves_by_regex() (dandi.move.LocalizedMover method) (dandi.move.LocalRemoteMover method) (dandi.move.Mover method) capture_all_logs() (in module dandi.tests.fixtures) check_dandi_version() (in module dandi.utils) check_replace_asset() (in module dandi.upload) check_schema_version() (dandi.dandiapi.DandiAPIClient method) checksum_zarr_dir() (in module dandi.support.digests) chunked() (in module dandi.utils) cli_bad_versions (dandi.utils.ServerInfo attribute) cli_minimal_version (dandi.utils.ServerInfo attribute) client (dandi.dandiapi.BaseRemoteAsset attribute) (dandi.dandiapi.RemoteDandiset attribute) (dandi.dandiapi.RemoteZarrEntry attribute) (dandi.delete.Deleter attribute) (dandi.tests.fixtures.DandiAPI attribute) (dandi.tests.fixtures.SampleDandiset property) columns (dandi.move.Mover property) command line option --allow-any-path, [1] --dandi-instance, [1], [2], [3], [4] --dandiset, [1] --dandiset-path --devel-debug, [1], [2], [3], [4] --diff --digest --download --dry-run --existing, [1], [2], [3] --fields, [1] --files-mode --force --format, [1] --grouping --ignore --invalid --jobs, [1], [2], [3] --log-level --media-files-mode --metadata --min-severity --output-dir --path-type --pdb --preserve-tree --recursive --regex --required-field --schema, [1] --shell --skip-missing --sync, [1] --update-external-file-paths --upload-dandiset-metadata --use-fake-digest --validation --when --work-on --yes -d, [1], [2], [3] -e, [1], [2], [3] -f, [1], [2] -F, [1] -g -i, [1], [2], [3], [4] -J, [1], [2], [3] -l -o -r -s -w -y

compare_moves() (dandi.move.LocalRemoteMover method) compile_moves() (dandi.move.LocalizedMover method) confirm() (dandi.delete.Deleter method) contact_person (dandi.dandiapi.RemoteDandiset property) COPY (dandi.organize.CopyMode attribute) (dandi.organize.FileOperationMode attribute) copy() (dandi.organize.CopyMode method) copy_file() (in module dandi.utils) CopyMode (class in dandi.organize) create_dandiset() (dandi.dandiapi.DandiAPIClient method) create_dataset_yml_template() (in module dandi.organize) create_unique_filenames_from_metadata() (in module dandi.organize) created (dandi.dandiapi.BaseRemoteAsset attribute) (dandi.dandiapi.RemoteDandiset property) (dandi.dandiapi.Version attribute) CRITICAL (dandi.validate.Severity attribute)

D

dandi (dandi.validate.Validator attribute) dandi.consts module dandi.dandiapi module dandi.dandiarchive module dandi.delete module dandi.download module dandi.files module dandi.misctypes module dandi.move module dandi.organize module dandi.support.digests module dandi.tests.fixtures module dandi.tests.skip module dandi.upload module dandi.utils module dandi.validate module dandi_authenticate() (dandi.dandiapi.DandiAPIClient method) DANDI_DEVEL, [1], [2], [3], [4], [5] dandi_etag() (dandi.misctypes.Digest class method) dandi_file() (in module dandi.files) DANDI_LAYOUT (dandi.validate.Standard attribute) DANDI_SCHEMA (dandi.validate.Standard attribute) dandi_zarr (dandi.validate.Validator attribute) dandi_zarr() (dandi.misctypes.Digest class method) DandiAPI (class in dandi.tests.fixtures) DandiAPIClient (class in dandi.dandiapi) DandiFile (class in dandi.files) DandiInstance (class in dandi.consts) dandischema (dandi.validate.Validator attribute) dandiset (dandi.delete.Deleter attribute) (dandi.move.RemoteMover attribute) (dandi.tests.fixtures.SampleDandiset attribute) DANDISET (dandi.validate.Scope attribute) dandiset_id (dandi.dandiapi.RemoteAsset attribute) (dandi.dandiarchive.BaseAssetIDURL attribute) (dandi.dandiarchive.ParsedDandiURL attribute) (dandi.tests.fixtures.SampleDandiset attribute) DANDISET_ID_REGEX (in module dandi.consts) dandiset_path (dandi.files.DandiFile attribute) (dandi.move.LocalMover attribute) (dandi.validate.ValidationResult attribute)

DandisetMetadataFile (class in dandi.files) DandisetURL (class in dandi.dandiarchive) DATASET (dandi.validate.Scope attribute) dataset_files (dandi.files.BIDSDatasetDescriptionAsset attribute) dataset_path (dandi.validate.ValidationResult attribute) DEBUG (dandi.download.DownloadFormat attribute) delayed() (in module dandi.utils) delete (dandi.move.Movement attribute) delete() (dandi.dandiapi.RemoteAsset method) (dandi.dandiapi.RemoteDandiset method) (dandi.dandiapi.RESTFullAPIClient method) (dandi.move.LocalizedMover method) (dandi.move.LocalMover method) (dandi.move.RemoteMover method) (in module dandi.delete) delete_dandiset() (dandi.delete.Deleter method) Deleter (class in dandi.delete) deleting_dandiset (dandi.delete.Deleter attribute) dest (dandi.move.Movement attribute) dest_exists (dandi.move.Movement property) detect_link_type() (in module dandi.organize) Digest (class in dandi.misctypes) digest (dandi.dandiapi.RemoteZarrEntry attribute) (dandi.files.ZarrStat attribute) digest_funcs (dandi.support.digests.Digester attribute) digest_type (dandi.dandiapi.BaseRemoteAsset property) Digester (class in dandi.support.digests) digests (dandi.download.DownloadDirectory attribute) (dandi.support.digests.Digester attribute) dirpath (dandi.download.DownloadDirectory attribute) DLState (class in dandi.download) DO (dandi.consts.SyncMode attribute) docker_compose_setup() (in module dandi.tests.fixtures) DONE (dandi.download.DLState attribute) download() (dandi.dandiapi.BaseRemoteAsset method) (in module dandi.download) download_directory() (dandi.dandiapi.RemoteDandiset method) DOWNLOAD_SUFFIX (in module dandi.consts) download_url (dandi.dandiapi.RemoteAsset property) (dandi.dandiapi.RemoteZarrEntry property) DownloadDirectory (class in dandi.download) downloaded (dandi.download.DownloadProgress attribute) DownloadExisting (class in dandi.download) DownloadFormat (class in dandi.download) DOWNLOADING (dandi.download.DLState attribute) downloading (dandi.download.ProgressCombiner attribute) DownloadProgress (class in dandi.download) DRAFT (in module dandi.consts) draft_version (dandi.dandiapi.RemoteDandiset property) DRY (dandi.organize.FileOperationMode attribute) dspath (dandi.tests.fixtures.SampleDandiset attribute) DUMMY_DANDI_ETAG (in module dandi.misctypes)

E

embargo_status (dandi.dandiapi.RemoteDandiset property) EMBARGOED (dandi.consts.EmbargoStatus attribute) EmbargoStatus (class in dandi.consts) ensure_datetime() (in module dandi.utils) ensure_strtime() (in module dandi.utils) environment variable {INSTANCE_NAME}_API_KEY DANDI_DEVEL, [1], [2], [3], [4], [5] ERROR (dandi.download.DLState attribute) (dandi.download.DownloadExisting attribute) (dandi.move.MoveExisting attribute) (dandi.upload.UploadExisting attribute)

error (dandi.validate.MissingFileContent attribute) ERROR (dandi.validate.Severity attribute) error_file() (in module dandi.upload) errors (dandi.upload.Uploaded attribute) EXACT (dandi.download.PathType attribute) exclude_from_zarr() (in module dandi.utils) exists() (dandi.files.LocalZarrEntry method) (dandi.misctypes.BasePath method)

F

FAIL (dandi.organize.OrganizeInvalid attribute) feed() (dandi.download.ProgressCombiner method) field (dandi.dandiapi.RemoteValidationError attribute) File (class in dandi.move) FILE (dandi.validate.Scope attribute) file_qty (dandi.download.ProgressCombiner attribute) file_states (dandi.download.ProgressCombiner attribute) FileOperationMode (class in dandi.organize) filepath (dandi.download.DownloadDirectory attribute) (dandi.files.DandiFile attribute) (dandi.files.LocalZarrEntry property) (dandi.misctypes.LocalReadableFile attribute) files (dandi.files.ZarrStat attribute) files_fed (dandi.download.ProgressCombiner attribute) filetree (dandi.files.LocalDirectoryAsset property) (dandi.files.ZarrAsset property) filter_invalid_metadata_rows() (in module dandi.organize) find_bids_dataset_description() (in module dandi.files)

find_dandi_files() (in module dandi.files) find_dandiset_and_subpath() (in module dandi.move) find_files() (in module dandi.utils) find_local_asset() (in module dandi.delete) find_parent_directory_containing() (in module dandi.utils) flatten() (in module dandi.utils) flattened() (in module dandi.utils) fns (dandi.tests.skip.Namespace attribute) Folder (class in dandi.move) FOLDER (dandi.validate.Scope attribute) follow_redirect() (in module dandi.dandiarchive) for_dandi_instance() (dandi.dandiapi.DandiAPIClient class method) for_version() (dandi.dandiapi.RemoteDandiset method) FORCE (dandi.upload.UploadExisting attribute) fp (dandi.download.DownloadDirectory attribute) from_base_data() (dandi.dandiapi.BaseRemoteAsset class method) from_data() (dandi.dandiapi.RemoteAsset class method) (dandi.dandiapi.RemoteDandiset class method) fromisoformat() (in module dandi.utils)

G

GenericAsset (class in dandi.files) GenericBIDSAsset (class in dandi.files) get() (dandi.dandiapi.RESTFullAPIClient method) get_asset() (dandi.dandiapi.DandiAPIClient method) (dandi.dandiapi.RemoteDandiset method) get_asset_by_path() (dandi.dandiapi.RemoteDandiset method) get_asset_ids() (dandi.dandiarchive.AssetIDURL method) (dandi.dandiarchive.BaseAssetIDURL method) (dandi.dandiarchive.ParsedDandiURL method) get_assets() (dandi.dandiapi.RemoteDandiset method) (dandi.dandiarchive.AssetFolderURL method) (dandi.dandiarchive.AssetGlobURL method) (dandi.dandiarchive.AssetIDURL method) (dandi.dandiarchive.AssetItemURL method) (dandi.dandiarchive.AssetPathPrefixURL method) (dandi.dandiarchive.BaseAssetIDURL method) (dandi.dandiarchive.DandisetURL method) (dandi.dandiarchive.ParsedDandiURL method) (dandi.move.LocalizedMover method) (dandi.move.LocalMover method) (dandi.move.RemoteMover method) get_assets_by_glob() (dandi.dandiapi.RemoteDandiset method) get_assets_with_path_prefix() (dandi.dandiapi.RemoteDandiset method) get_client() (dandi.dandiarchive.ParsedDandiURL method) get_content_url() (dandi.dandiapi.BaseRemoteAsset method) get_dandietag() (in module dandi.support.digests) get_dandiset() (dandi.dandiapi.DandiAPIClient method) (dandi.dandiarchive.ParsedDandiURL method) get_dandisets() (dandi.dandiapi.DandiAPIClient method) get_digest() (dandi.dandiapi.BaseRemoteAsset method) (dandi.files.LocalAsset method) (dandi.files.LocalFileAsset method) (dandi.files.LocalZarrEntry method) (dandi.files.ZarrAsset method) (in module dandi.support.digests) get_done() (dandi.download.ProgressCombiner method) get_download_file_iter() (dandi.dandiapi.BaseRemoteAsset method) (dandi.dandiapi.RemoteZarrEntry method) get_entry_by_path() (dandi.dandiapi.BaseRemoteZarrAsset method) get_filename() (dandi.misctypes.LocalReadableFile method) (dandi.misctypes.Readable method) (dandi.misctypes.RemoteReadableAsset method) get_filtered_gitrepo_fixture() (in module dandi.tests.fixtures) get_gitrepo_fixture() (in module dandi.tests.fixtures) get_instance() (in module dandi.utils)

get_metadata() (dandi.dandiapi.BaseRemoteAsset method) (dandi.dandiapi.RemoteDandiset method) (dandi.files.BIDSAsset method) (dandi.files.DandiFile method) (dandi.files.DandisetMetadataFile method) (dandi.files.LocalAsset method) (dandi.files.LocalFileAsset method) (dandi.files.NWBAsset method) (dandi.files.NWBBIDSAsset method) (dandi.files.ZarrAsset method) (dandi.files.ZarrBIDSAsset method) get_mime_type() (in module dandi.utils) get_module_version() (in module dandi.utils) get_mtime() (dandi.misctypes.LocalReadableFile method) (dandi.misctypes.Readable method) (dandi.misctypes.RemoteReadableAsset method) get_obj_id() (in module dandi.organize) get_path() (dandi.move.LocalizedMover method) (dandi.move.LocalMover method) (dandi.move.RemoteMover method) get_raw_digest() (dandi.dandiapi.BaseRemoteAsset method) get_raw_metadata() (dandi.dandiapi.BaseRemoteAsset method) (dandi.dandiapi.RemoteDandiset method) get_retry_after() (in module dandi.utils) get_size() (dandi.misctypes.LocalReadableFile method) (dandi.misctypes.Readable method) (dandi.misctypes.RemoteReadableAsset method) get_status() (dandi.download.ProgressCombiner method) get_url() (dandi.dandiapi.RESTFullAPIClient method) get_utcnow_datetime() (in module dandi.utils) get_validation_bids_version() (dandi.files.BIDSAsset method) get_validation_errors() (dandi.files.BIDSAsset method) (dandi.files.BIDSDatasetDescriptionAsset method) (dandi.files.DandiFile method) (dandi.files.DandisetMetadataFile method) (dandi.files.GenericBIDSAsset method) (dandi.files.LocalAsset method) (dandi.files.NWBAsset method) (dandi.files.NWBBIDSAsset method) (dandi.files.ZarrAsset method) (dandi.files.ZarrBIDSAsset method) get_version() (dandi.dandiapi.RemoteDandiset method) get_versions() (dandi.dandiapi.RemoteDandiset method) get_zarr_checksum() (in module dandi.support.digests) GLOB (dandi.download.PathType attribute) gui (dandi.consts.DandiInstance attribute)

H

HARDLINK (dandi.organize.CopyMode attribute) (dandi.organize.FileOperationMode attribute) Hasher (class in dandi.utils)

HED (dandi.validate.Standard attribute) hed_python_validator (dandi.validate.Validator attribute) hexdigest() (dandi.utils.Hasher method) HINT (dandi.validate.Severity attribute)

I

id (dandi.validate.ValidationResult attribute) identifier (dandi.dandiapi.BaseRemoteAsset attribute) (dandi.dandiapi.RemoteDandiset attribute) (dandi.dandiapi.Version attribute) IGNORE (dandi.upload.UploadValidation attribute) INFO (dandi.validate.Severity attribute) instance (dandi.dandiarchive.ParsedDandiURL attribute) (dandi.tests.fixtures.DandiAPI property) instance_id (dandi.tests.fixtures.DandiAPI property) INTERNAL (dandi.validate.OriginType attribute) is_dir() (dandi.files.LocalZarrEntry method) (dandi.misctypes.BasePath method) (dandi.move.LocalizedMover method) (dandi.move.LocalMover method) (dandi.move.RemoteMover method) is_file() (dandi.files.LocalZarrEntry method) (dandi.misctypes.BasePath method) (dandi.move.LocalizedMover method) (dandi.move.LocalMover method) (dandi.move.RemoteMover method)

is_interactive() (in module dandi.utils) is_page2_url() (in module dandi.utils) is_root() (dandi.misctypes.BasePath method) is_same_time() (in module dandi.utils) is_same_url() (in module dandi.delete) is_undefined() (in module dandi.organize) is_url() (in module dandi.utils) ItemsSummary (class in dandi.download) iter_upload() (dandi.files.LocalAsset method) (dandi.files.LocalFileAsset method) (dandi.files.ZarrAsset method) iter_upload_raw_asset() (dandi.dandiapi.RemoteDandiset method) iterdir() (dandi.files.LocalZarrEntry method) (dandi.misctypes.BasePath method) iterfiles() (dandi.dandiapi.BaseRemoteZarrAsset method) (dandi.files.LocalDirectoryAsset method)

J

joinpath() (dandi.misctypes.BasePath method) joinurl() (in module dandi.utils) JSON (dandi.validate.Standard attribute) json_dict() (dandi.dandiapi.BaseRemoteAsset method) (dandi.dandiapi.RemoteDandiset method) (dandi.dandiapi.RemoteValidationError method) (dandi.dandiapi.Version method)

jupyterhub (dandi.utils.ServerServices attribute)

L

list_paths() (in module dandi.utils) load_jsonl() (in module dandi.utils) load_validation_jsonl() (in module dandi.validate) local (dandi.move.LocalRemoteMover attribute) LOCAL (dandi.move.MoveWorkOn attribute) local_dandi_api (dandi.tests.fixtures.SampleDandisetFactory attribute) local_dandi_api() (in module dandi.tests.fixtures) local_dandiset_path (dandi.move.RemoteMover attribute)

LocalAsset (class in dandi.files) LocalDirectoryAsset (class in dandi.files) LocalFileAsset (class in dandi.files) LocalizedMover (class in dandi.move) LocalMover (class in dandi.move) LocalReadableFile (class in dandi.misctypes) LocalRemoteMover (class in dandi.move) LocalZarrEntry (class in dandi.files) lock (dandi.download.DownloadDirectory attribute)

M

Mark (class in dandi.tests.skip) match() (dandi.dandiapi.RemoteZarrEntry method) (dandi.misctypes.BasePath method) MAX_CHUNK_SIZE (in module dandi.consts) MAX_ZARR_DEPTH (in module dandi.consts) maxsize (dandi.download.ProgressCombiner attribute) md5file_nocache() (in module dandi.support.digests) message (dandi.dandiapi.RemoteValidationError attribute) (dandi.validate.ValidationResult attribute) metadata (dandi.validate.ValidationResult attribute) metadata_nwb_file_fields (in module dandi.consts) MissingFileContent (class in dandi.validate) mkdandiset() (dandi.tests.fixtures.SampleDandisetFactory method) model_config (dandi.dandiapi.BaseRemoteAsset attribute) (dandi.dandiapi.BaseRemoteBlobAsset attribute) (dandi.dandiapi.BaseRemoteZarrAsset attribute) (dandi.dandiapi.RemoteAsset attribute) (dandi.dandiapi.RemoteBlobAsset attribute) (dandi.dandiapi.RemoteValidationError attribute) (dandi.dandiapi.RemoteZarrAsset attribute) (dandi.dandiapi.Version attribute) (dandi.dandiapi.VersionInfo attribute) (dandi.utils.ServerInfo attribute) (dandi.utils.ServerServices attribute) (dandi.utils.ServiceURL attribute) (dandi.validate.Origin attribute) (dandi.validate.ValidationResult attribute) model_post_init() (dandi.dandiapi.BaseRemoteAsset method) (dandi.dandiapi.BaseRemoteBlobAsset method) (dandi.dandiapi.BaseRemoteZarrAsset method) (dandi.dandiapi.RemoteAsset method) (dandi.dandiapi.RemoteBlobAsset method) (dandi.dandiapi.RemoteZarrAsset method) (dandi.validate.ValidationResult method) modified (dandi.dandiapi.BaseRemoteAsset attribute) (dandi.dandiapi.RemoteDandiset property) (dandi.dandiapi.RemoteZarrEntry attribute) (dandi.dandiapi.Version attribute) (dandi.files.DandiFile property) (dandi.files.LocalZarrEntry property)

module dandi.consts dandi.dandiapi dandi.dandiarchive dandi.delete dandi.download dandi.files dandi.misctypes dandi.move dandi.organize dandi.support.digests dandi.tests.fixtures dandi.tests.skip dandi.upload dandi.utils dandi.validate monkeypatch_del_api_key_env() (dandi.tests.fixtures.DandiAPI method) monkeypatch_set_api_key_env() (dandi.tests.fixtures.DandiAPI method) most_recent_published_version (dandi.dandiapi.RemoteDandiset property) MOVE (dandi.organize.CopyMode attribute) (dandi.organize.FileOperationMode attribute) move() (dandi.move.LocalizedMover method) (dandi.move.LocalMover method) (dandi.move.RemoteMover method) (in module dandi.move) move_file() (in module dandi.utils) MoveExisting (class in dandi.move) Movement (class in dandi.move) Mover (class in dandi.move) MoveWorkOn (class in dandi.move) MultiAssetURL (class in dandi.dandiarchive)

N

name (dandi.consts.DandiInstance attribute) (dandi.dandiapi.RemoteZarrEntry property) (dandi.dandiapi.Version attribute) (dandi.misctypes.BasePath property) Namespace (class in dandi.tests.skip) NamespaceAttributeError navigate() (dandi.dandiarchive.BaseAssetIDURL method) (dandi.dandiarchive.ParsedDandiURL method) navigate_url() (in module dandi.dandiarchive) new_dandiset() (in module dandi.tests.fixtures) no_docker_commands() (in module dandi.tests.skip)

no_docker_engine() (in module dandi.tests.skip) no_git() (in module dandi.tests.skip) no_network() (in module dandi.tests.skip) no_ssh() (in module dandi.tests.skip) NWB (dandi.validate.Standard attribute) nwb_dandiset() (in module dandi.tests.fixtures) nwb_test_data() (in module dandi.tests.fixtures) NWBAsset (class in dandi.files) NWBBIDSAsset (class in dandi.files) nwbfiles_video_common() (in module dandi.tests.fixtures) nwbfiles_video_unique() (in module dandi.tests.fixtures) nwbinspector (dandi.validate.Validator attribute)

O

offset (dandi.download.DownloadDirectory attribute) OME_ZARR (dandi.validate.Standard attribute) on_windows() (in module dandi.tests.skip) only_non_data (dandi.validate.MissingFileContent attribute) OPEN (dandi.consts.EmbargoStatus attribute) open() (dandi.misctypes.LocalReadableFile method) (dandi.misctypes.Readable method) (dandi.misctypes.RemoteReadableAsset method) organize() (in module dandi.organize) organize_external_files() (in module dandi.organize) organized_nwb_dir() (in module dandi.tests.fixtures)

organized_nwb_dir2() (in module dandi.tests.fixtures) organized_nwb_dir3() (in module dandi.tests.fixtures) organized_nwb_dir4() (in module dandi.tests.fixtures) OrganizeInvalid (class in dandi.organize) Origin (class in dandi.validate) origin (dandi.validate.ValidationResult attribute) origin_result (dandi.validate.ValidationResult attribute) OriginType (class in dandi.validate) OVERWRITE (dandi.download.DownloadExisting attribute) (dandi.move.MoveExisting attribute) (dandi.upload.UploadExisting attribute) OVERWRITE_DIFFERENT (dandi.download.DownloadExisting attribute)

P

page_size (dandi.dandiapi.RESTFullAPIClient attribute) page_workers (dandi.dandiapi.RESTFullAPIClient attribute) paginate() (dandi.dandiapi.RESTFullAPIClient method) pairing() (in module dandi.download) Parallel() (in module dandi.utils) parent (dandi.files.LocalZarrEntry property) (dandi.misctypes.BasePath property) parents (dandi.misctypes.BasePath property) parse_dandi_url() (in module dandi.dandiarchive) ParsedDandiURL (class in dandi.dandiarchive) parts (dandi.dandiapi.RemoteZarrEntry attribute) (dandi.misctypes.BasePath attribute) patch() (dandi.dandiapi.RESTFullAPIClient method) path (dandi.dandiapi.BaseRemoteAsset attribute) (dandi.dandiarchive.AssetItemURL attribute) (dandi.dandiarchive.MultiAssetURL attribute) (dandi.files.LocalAsset attribute) (dandi.move.File attribute) (dandi.move.Folder attribute) (dandi.validate.ValidationResult attribute) path_is_subpath() (in module dandi.utils) path_regex (dandi.validate.ValidationResult attribute) PathType (class in dandi.download)

placename (dandi.move.LocalizedMover property) (dandi.move.LocalMover property) (dandi.move.RemoteMover property) pluralize() (in module dandi.utils) populate_dataset_yml() (in module dandi.organize) post() (dandi.dandiapi.RESTFullAPIClient method) post_upload_size_check() (in module dandi.utils) pre_upload_size_check() (in module dandi.utils) prev_status (dandi.download.ProgressCombiner attribute) process_assets_debug() (dandi.delete.Deleter method) process_assets_pyout() (dandi.delete.Deleter method) process_movement() (dandi.move.LocalizedMover method) (dandi.move.LocalRemoteMover method) (dandi.move.Mover method) process_moves_debug() (dandi.move.Mover method) process_moves_pyout() (dandi.move.Mover method) ProgressCombiner (class in dandi.download) publish() (dandi.dandiapi.RemoteDandiset method) PUBLISHED_VERSION_REGEX (in module dandi.consts) purview (dandi.validate.ValidationResult property) put() (dandi.dandiapi.RESTFullAPIClient method) pynwb (dandi.validate.Validator attribute) PYOUT (dandi.download.DownloadFormat attribute) PYOUTHelper (class in dandi.download)

R

Readable (class in dandi.misctypes) record_version (dandi.validate.ValidationResult attribute) REDIRECT_HEAD_TIMEOUT (in module dandi.consts) redirector (dandi.consts.DandiInstance property) REFRESH (dandi.download.DownloadExisting attribute) (dandi.upload.UploadExisting attribute) refresh() (dandi.dandiapi.RemoteDandiset method) register_asset() (dandi.delete.Deleter method) register_asset_folder() (dandi.delete.Deleter method) register_assets_url() (dandi.delete.Deleter method) register_dandiset() (dandi.delete.Deleter method) register_local_path_equivalent() (dandi.delete.Deleter method) register_url() (dandi.delete.Deleter method) relcontents (dandi.move.Folder attribute) remote (dandi.move.LocalRemoteMover attribute) REMOTE (dandi.move.MoveWorkOn attribute)

remote_assets (dandi.delete.Deleter attribute) RemoteAsset (class in dandi.dandiapi) RemoteBlobAsset (class in dandi.dandiapi) RemoteDandiset (class in dandi.dandiapi) RemoteMover (class in dandi.move) RemoteReadableAsset (class in dandi.misctypes) RemoteValidationError (class in dandi.dandiapi) RemoteZarrAsset (class in dandi.dandiapi) RemoteZarrEntry (class in dandi.dandiapi) rename() (dandi.dandiapi.RemoteAsset method) request() (dandi.dandiapi.RESTFullAPIClient method) REQUIRE (dandi.upload.UploadValidation attribute) resolve() (dandi.move.LocalizedMover method) RESTFullAPIClient (class in dandi.dandiapi) RETRY_STATUSES (in module dandi.consts) rmfiles() (dandi.dandiapi.BaseRemoteZarrAsset method) root_path (dandi.misctypes.BasePath property)

S

S3_MAX_SINGLE_PART_UPLOAD (in module dandi.consts) sample_dandiset_factory() (in module dandi.tests.fixtures) SampleDandiset (class in dandi.tests.fixtures) SampleDandisetFactory (class in dandi.tests.fixtures) Scope (class in dandi.validate) scope (dandi.validate.ValidationResult attribute) ServerInfo (class in dandi.utils) ServerServices (class in dandi.utils) services (dandi.utils.ServerInfo attribute) ServiceURL (class in dandi.utils) set_dandiset() (dandi.delete.Deleter method) set_metadata() (dandi.dandiapi.RemoteAsset method) (dandi.dandiapi.RemoteDandiset method) set_raw_metadata() (dandi.dandiapi.RemoteAsset method) (dandi.dandiapi.RemoteBlobAsset method) (dandi.dandiapi.RemoteDandiset method) (dandi.dandiapi.RemoteZarrAsset method) setup_exceptionhook() (in module dandi.utils) Severity (class in dandi.validate) severity (dandi.validate.ValidationResult attribute) shortened_repr() (in module dandi.utils) simple1_nwb() (in module dandi.tests.fixtures) simple1_nwb_metadata() (in module dandi.tests.fixtures) simple2_nwb() (in module dandi.tests.fixtures) simple3_nwb() (in module dandi.tests.fixtures) simple4_nwb() (in module dandi.tests.fixtures) simple5_nwb() (in module dandi.tests.fixtures) SIMULATE (dandi.organize.FileOperationMode attribute) SingleAssetURL (class in dandi.dandiarchive) size (dandi.dandiapi.BaseRemoteAsset attribute) (dandi.dandiapi.RemoteZarrEntry attribute) (dandi.dandiapi.Version attribute) (dandi.download.DownloadProgress attribute) (dandi.files.DandiFile property) (dandi.files.LocalDirectoryAsset property) (dandi.files.LocalZarrEntry property) (dandi.files.ZarrStat attribute) (dandi.misctypes.BasePath property) (dandi.upload.Uploaded attribute)

SKIP (dandi.download.DownloadExisting attribute) (dandi.move.MoveExisting attribute) skip (dandi.move.Movement attribute) SKIP (dandi.upload.UploadExisting attribute) (dandi.upload.UploadValidation attribute) skip (dandi.validate.MissingFileContent attribute) skip_file() (in module dandi.upload) skip_missing (dandi.delete.Deleter attribute) SkipIf (class in dandi.tests.skip) SKIPPED (dandi.download.DLState attribute) src (dandi.move.Movement attribute) Standard (class in dandi.validate) standard (dandi.validate.Origin attribute) standard_schema_version (dandi.validate.Origin attribute) standard_version (dandi.validate.Origin attribute) STARTING (dandi.download.DLState attribute) stat() (dandi.files.ZarrAsset method) status (dandi.dandiapi.Version attribute) status_field (dandi.move.LocalMover property) (dandi.move.LocalRemoteMover property) (dandi.move.Mover property) (dandi.move.RemoteMover property) stem (dandi.dandiapi.RemoteZarrEntry property) (dandi.misctypes.BasePath property) StrEnum (class in dandi.utils) subpath (dandi.move.LocalizedMover attribute) (dandi.move.LocalMover attribute) (dandi.move.RemoteMover attribute) suffix (dandi.dandiapi.RemoteZarrEntry property) (dandi.misctypes.BasePath property) suffixes (dandi.dandiapi.RemoteZarrEntry property) (dandi.misctypes.BasePath property) SYMLINK (dandi.organize.CopyMode attribute) (dandi.organize.FileOperationMode attribute) SyncMode (class in dandi.consts)

T

tensorstore (dandi.validate.Validator attribute) text_dandiset() (in module dandi.tests.fixtures) tmp_home() (in module dandi.tests.fixtures)

tmp_path_factory (dandi.tests.fixtures.SampleDandisetFactory attribute) total_downloaded (dandi.download.ProgressCombiner attribute) TSV (dandi.validate.Standard attribute) type (dandi.validate.Origin attribute)

U

under_paths() (in module dandi.utils) UNEMBARGOING (dandi.consts.EmbargoStatus attribute) update() (dandi.utils.Hasher method) updating_fields (dandi.move.LocalRemoteMover property) (dandi.move.Mover property) upload() (dandi.files.LocalAsset method) (dandi.tests.fixtures.SampleDandiset method) (in module dandi.upload)

upload_kwargs (dandi.tests.fixtures.SampleDandiset attribute) upload_raw_asset() (dandi.dandiapi.RemoteDandiset method) Uploaded (class in dandi.upload) UploadExisting (class in dandi.upload) UploadValidation (class in dandi.upload) url (dandi.misctypes.RemoteReadableAsset attribute) (dandi.utils.ServiceURL attribute) urls() (dandi.consts.DandiInstance method)

V

validate_organized_path() (in module dandi.organize) VALIDATION (dandi.validate.OriginType attribute) validation_companion_path() (in module dandi.validate) ValidationResult (class in dandi.validate) Validator (class in dandi.validate) validator (dandi.validate.Origin attribute) validator_version (dandi.validate.Origin attribute) value (dandi.misctypes.Digest attribute) Version (class in dandi.dandiapi) version (dandi.dandiapi.RemoteDandiset property) (dandi.utils.ServerInfo attribute)

version_api_path (dandi.dandiapi.RemoteDandiset property) version_api_url (dandi.dandiapi.RemoteDandiset property) version_id (dandi.dandiapi.RemoteAsset attribute) (dandi.dandiapi.RemoteDandiset property) (dandi.dandiarchive.BaseAssetIDURL attribute) (dandi.dandiarchive.ParsedDandiURL attribute) VERSION_REGEX (in module dandi.consts) version_validation_errors (dandi.dandiapi.VersionInfo attribute) VersionInfo (class in dandi.dandiapi) video_files() (in module dandi.tests.fixtures) VideoAsset (class in dandi.files)

W

wait_until_valid() (dandi.dandiapi.RemoteDandiset method) WARN (dandi.organize.OrganizeInvalid attribute) WARNING (dandi.validate.Severity attribute) webui (dandi.utils.ServerServices attribute) with_name() (dandi.misctypes.BasePath method)

with_pathsep() (in module dandi.utils) with_stem() (dandi.misctypes.BasePath method) with_suffix() (dandi.misctypes.BasePath method) within_asset_paths (dandi.validate.ValidationResult attribute) write_validation_jsonl() (in module dandi.validate) writefile (dandi.download.DownloadDirectory attribute)

Y

YAML (dandi.validate.Standard attribute) yaml_dump() (in module dandi.utils)

yaml_load() (in module dandi.utils) yielded_size (dandi.download.ProgressCombiner attribute)

Z

ZARR (dandi.dandiapi.AssetType attribute) zarr (dandi.dandiapi.BaseRemoteZarrAsset attribute) ZARR (dandi.validate.Standard attribute) zarr (dandi.validate.Validator attribute) zarr_basepath (dandi.files.LocalZarrEntry attribute) zarr_dandiset() (in module dandi.tests.fixtures) ZARR_DELETE_BATCH_SIZE (in module dandi.consts)

zarr_id (dandi.dandiapi.RemoteZarrEntry attribute) ZARR_MIME_TYPE (in module dandi.consts) zarr_size (dandi.download.ProgressCombiner attribute) ZARR_UPLOAD_BATCH_SIZE (in module dandi.consts) ZarrAsset (class in dandi.files) ZarrBIDSAsset (class in dandi.files) ZarrStat (class in dandi.files)